Finding the unloaded geometry#
from fenics_plotly import plot
import pulse
geometry = pulse.HeartGeometry.from_file(pulse.mesh_paths["simple_ellipsoid"])
# geometry = pulse.geometries.prolate_ellipsoid_geometry(mesh_size_factor=3.0)
material = pulse.NeoHookean()
# material = pulse.Guccione()
2024-06-27 20:49:50,663 [620] INFO pulse.geometry_utils:
Load mesh from h5
# Parameter for the cardiac boundary conditions
bcs_parameters = pulse.MechanicsProblem.default_bcs_parameters()
bcs_parameters["base_spring"] = 1.0
bcs_parameters["base_bc"] = "fix_x"
# Create the problem
problem = pulse.MechanicsProblem(geometry, material, bcs_parameters=bcs_parameters)
# Suppose geometry is loaded with a pressure of 1 kPa
# and create the unloader
unloader = pulse.FixedPointUnloader(problem=problem, pressure=3.0)
2024-06-27 20:49:50,800 [620] INFO pulse.unloader:
-------------------------- Unloading options ---------------------------
Target pressure: 3.0
maxiter = 10
tolerance = 0.0001
regenerate_fibers (serial only)= False
------------------------------------------------------------------------
# Unload the geometry
unloader.unload()
2024-06-27 20:49:50,805 [620] INFO pulse.unloader: ------------------------------------------------------------------------
2024-06-27 20:49:50,806 [620] INFO pulse.unloader: ----------------------------Start unloading-----------------------------
2024-06-27 20:49:50,806 [620] INFO pulse.unloader: ------------------------------------------------------------------------
2024-06-27 20:49:50,838 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:50,839 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:50,840 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:50,840 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:51,024 [620] DEBUG UFL_LEGACY: Blocks of each mode:
1 full
2024-06-27 20:49:51,894 [620] INFO pulse.unloader:
LV Volume of original geometry = 0.749 ml
2024-06-27 20:49:51,913 [620] INFO pulse.unloader:
Do an intial solve
2024-06-27 20:49:52,004 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:52,005 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:52,005 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:52,006 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:52,006 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:49:52,542 [620] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-06-27 20:49:52,618 [620] DEBUG UFL_LEGACY: Blocks of each mode:
2024-06-27 20:49:52,829 [620] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-06-27 20:50:33,344 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:33,344 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:33,345 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:33,346 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:33,346 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:33,549 [620] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-06-27 20:50:33,625 [620] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-06-27 20:50:33,819 [620] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-06-27 20:50:37,466 [620] INFO pulse.unloader:
Iteration: 0
2024-06-27 20:50:41,112 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-06-27 20:50:41,155 [620] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-06-27 20:50:45,360 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:50:45,364 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/quadrature/quadraturerepresentation.py:58: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-06-27 20:50:45,408 [620] WARNING FFC: Ignoring precision in integral metadata compiled using quadrature representation. Not implemented.
2024-06-27 20:50:45,803 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:50:45,847 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:50:45,848 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:50:45,890 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:50:45,892 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:50:45,928 [620] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.568 ml
2024-06-27 20:50:46,081 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:46,082 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:46,082 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:46,083 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:46,083 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:50:46,378 [620] DEBUG UFL_LEGACY: Blocks of each mode:
99 full
2024-06-27 20:50:46,454 [620] DEBUG UFL_LEGACY: Blocks of each mode:
2024-06-27 20:50:46,666 [620] DEBUG UFL_LEGACY: Blocks of each mode:
18 full
2024-06-27 20:51:25,786 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:51:25,787 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:51:25,787 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:51:25,788 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:51:25,788 [620] INFO UFL_LEGACY: Adjusting missing element cell to tetrahedron.
2024-06-27 20:51:25,927 [620] DEBUG UFL_LEGACY: Blocks of each mode:
10 full
2024-06-27 20:51:26,003 [620] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-06-27 20:51:26,193 [620] DEBUG UFL_LEGACY: Blocks of each mode:
3 full
2024-06-27 20:51:29,682 [620] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.568 ml
2024-06-27 20:51:29,855 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:29,856 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:29,898 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:29,899 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:29,941 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:29,943 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:29,982 [620] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.717 ml
2024-06-27 20:51:29,994 [620] INFO pulse.unloader:
Residual: 0.011328623428538017
2024-06-27 20:51:29,995 [620] INFO pulse.unloader:
Iteration: 1
2024-06-27 20:51:30,166 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:30,168 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:30,209 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:30,210 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:30,251 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:30,252 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:30,290 [620] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.596 ml
2024-06-27 20:51:33,300 [620] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.596 ml
2024-06-27 20:51:33,473 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,474 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,517 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,518 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,559 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,560 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,598 [620] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.754 ml
2024-06-27 20:51:33,610 [620] INFO pulse.unloader:
Residual: 0.001698010214540199
2024-06-27 20:51:33,611 [620] INFO pulse.unloader:
Iteration: 2
2024-06-27 20:51:33,782 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,784 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,825 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,827 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,867 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,869 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:33,907 [620] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.592 ml
2024-06-27 20:51:36,932 [620] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.592 ml
2024-06-27 20:51:37,104 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,105 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,147 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,148 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,190 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,192 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,229 [620] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.749 ml
2024-06-27 20:51:37,241 [620] INFO pulse.unloader:
Residual: 0.0002592876931300245
2024-06-27 20:51:37,241 [620] INFO pulse.unloader:
Iteration: 3
2024-06-27 20:51:37,413 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,414 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,455 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,456 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,498 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,499 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:37,536 [620] INFO pulse.unloading_utils:
LV Volume of original geometry = 0.593 ml
2024-06-27 20:51:40,553 [620] INFO pulse.unloading_utils:
LV Volume of inflated geometry = 0.593 ml
2024-06-27 20:51:40,726 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:40,727 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:40,769 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:40,770 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:40,811 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:40,812 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:40,850 [620] INFO pulse.unloading_utils:
LV Volume of new reference geometry = 0.750 ml
2024-06-27 20:51:40,862 [620] INFO pulse.unloader:
Residual: 3.931304295917144e-05
2024-06-27 20:51:40,863 [620] INFO pulse.unloader: ########################################################################
Unloading suceeding
# Get the unloaded geometry
unloaded_geometry = unloader.unloaded_geometry
2024-06-27 20:51:41,040 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:41,042 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:41,082 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:41,083 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:41,125 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
2024-06-27 20:51:41,126 [620] WARNING py.warnings: /usr/lib/python3/dist-packages/ffc/jitcompiler.py:234: QuadratureRepresentationDeprecationWarning:
*** ===================================================== ***
*** FFC: quadrature representation is deprecated! It will ***
*** likely be removed in 2018.2.0 release. Use uflacs ***
*** representation instead. ***
*** ===================================================== ***
fig = plot(geometry.mesh, opacity=0.0, show=False)
fig.add_plot(plot(unloaded_geometry.mesh, color="red", show=False))
fig.show()